PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g01300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 305aa    MW: 33429.9 Da    PI: 8.2221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g01300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018112134123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C++ Fs++  L  H++ H
  CA08g01300 112 FSCNFCKREFSTSQALGGHQNAH 134
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-6109139No hitNo description
Gene3DG3DSA:3.30.160.603.8E-4109138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDIFAMKKPC SSEASSISAA SEESHEVVTN TKKMKENVVE GPQLNKPSCV DLLVDLKVHN  60
GFNNNNNKTN SMISCSNLEP NLFNSTSTNT HASESSNEAT PKQKRTSDGR TFSCNFCKRE  120
FSTSQALGGH QNAHKQERAL AKRRNGPVDV VSPFGPPNYH PYYNPYSNFN SHIPFHGSFA  180
SRPSLGGTVQ GGNSFSAILK PTTSYQTWPF LSSYNFRFNL DKWSISSSSS SLFRSENPQE  240
NYNIGKIGIG GASLANSVSF ENKKIGNNLT LMNSPINVDD DNNLGGNNHM KKEEEEGLDL  300
NLKL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581618.10.0PREDICTED: zinc finger protein 6-like
TrEMBLK4AS861e-115K4AS86_SOLLC; Uncharacterized protein
STRINGSolyc01g005190.1.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-16C2H2 family protein